Typically, your reports at a prop firm will show your commission fees. The "clearing fees" are part of the overall commission you are paying. The other part is the prop firm's cut. Both parts should total to your negotiated rate with the prop firm (ie .01/share). This may or may not be broken out separately on your reports.
In addition, most if not all prop firms will charge you SEC fees on sell trades only. (.00003 * total value of stock traded) - note value of the trade, not # of shares.