I don't mind talking with you privately about it, but let me answer your questions here.
There is value to using very short correlation (30 day) and very long correlation (10 year.) The principle reason for using short correlations is to minimize the affect of "ghost features". Ghost features are artifacts of an outlier data point seriously affecting the data in disproportion to its likelihood. The principle reason for using long correlations is to be able to understand how modest correlation relates to macro-economics.
It is normal to use at least exponential weighting if not a full GARCH. A smoothing constant of 0.94 (half-life of 25 days) is popular. This has the benefit of a short correlation period while still technically complying with the Basal requirements.
In addition to weighing, people usually use the return = log difference and linear Pearson correlation.
Depending upon your needs it may not matter much. Here are examples of two highly correlated markets and two rather uncorrelated markets:
Code:
DJIA vs S&P Futures Correlation
Year Price Log Price Log Diff/Return
Linear Rank Linear Rank Linear Rank
2009 99.30% 99.40% 99.30% 99.40% 98.10% 96.70%
2008 99.50% 98.90% 99.50% 98.90% 98.40% 97.60%
2007 92.90% 94.40% 92.80% 94.40% 98.00% 96.60%
2006 97.20% 92.30% 96.90% 92.30% 95.20% 94.30%
2005 79.50% 75.60% 79.50% 75.60% 94.80% 93.30%
2004 85.50% 88.60% 85.60% 88.60% 96.30% 95.10%
2003 99.30% 99.20% 99.30% 99.20% 97.80% 97.00%
2002 98.00% 96.40% 98.30% 96.40% 97.20% 96.80%
S&P 500 vs Silver Correlation
Year Price Log Price Log Diff/Return
Linear Rank Linear Rank Linear Rank
2009 83.30% 84.70% 79.90% 84.70% 16.80% 25.60%
2008 84.80% 61.40% 87.70% 61.40% 10.20% 0.90%
2007 6.80% 8.00% 7.70% 8.00% 23.20% 24.90%
2006 55.80% 56.90% 55.40% 56.90% 8.10% 5.70%
2005 64.40% 48.90% 63.10% 48.90% 2.40% 1.30%
2004 34.30% 29.50% 34.10% 29.50% 7.30% 5.50%
2003 75.00% 75.70% 73.70% 75.70% -18.40% -21.40%
2002 -8.40% -8.00% -7.20% -8.00% -17.80% -18.80%
Clearly the return = difference of logs is the most useful for risk measurements (not so for pair-trading.)
When you get into the details, one needs to worry about separately generated volatility predictions and getting a positive definite matrix.
Carol Alexander provides a readable text on the subject
http://www.amazon.com/Market-Models...9755/ref=sr_1_5?ie=UTF8&qid=1294201096&sr=8-5. Her newer books (since 2001) are probably even better.
The other point was stress matrices. How would your portfolio correlation look if the LTCM meltdown recurred or black Friday?
We have only been talking about correlation itself and not all of the details of factor analysis and Value at Risk. These are valuable things too depending upon your purposes. There are whole companies who do just this time of analysis.