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There is a filtering prgram out there at http://www.cyclopstools.com. It can also have custom studies added to it.

There is a new one out there. www.cyclopstools.com. They will write custom studies for you.

Depending on exactly what you are looking for, I may have a piece of software for you. I have written a few systems and pair trading can be done on them, but I need to know exactly what you would want to send. I may even be able to to modify one of the programs to meet your needs.