I would also recommend green & company. I had the same situation and they walked me through what needed to be done. In regards to the schedule C transfer I don't believe this will work for a general partnership. The general partnership reports all income & expenses on the partnership form 1065...
Here is an article I came across today at
http://www.rothcpa.com/taxupdates.php
SCHEDULE D PANIC ATTACK SUBSIDES
The tax preparation community had worked itself into a frenzy over the instructions for the 2006 1040 Schedule D. The instructions implied that we would have to manually...